Advances in chemical and biological methods to identify microorganisms—from past to present

Ricardo Franco-Duarte; Lucia Černáková; Snehal Kadam; Karishma S. Kaushik; Bahare Salehi; Antonio Bevilacqua; Maria Rosaria Corbo; Hubert Antolak; Katarzyna Dybka-Stępień; Martyna Leszczewicz; Saulo Relison Tintino; Veruska Cintia Alexandrino de Souza; Javad Sharifi-Rad; Henrique Douglas Melo Coutinho; Natália Martins; Célia F. Rodrigues

doi:10.3390/microorganisms7050130

Advances in chemical and biological methods to identify microorganisms—from past to present

Ricardo Franco-Duarte
, Lucia Černáková
, Snehal Kadam
, Karishma S. Kaushik
, Bahare Salehi
, Antonio Bevilacqua
, Maria Rosaria Corbo
, Hubert Antolak
, Katarzyna Dybka-Stępień
, Martyna Leszczewicz
, Saulo Relison Tintino
, Veruska Cintia Alexandrino de Souza
, Javad Sharifi-Rad
, Henrique Douglas Melo Coutinho
, Natália Martins
, Célia F. Rodrigues

Producción científica: Contribución a una revista › Artículo de revisión › revisión exhaustiva

419 Citas (Scopus)

Resumen

Fast detection and identification of microorganisms is a challenging and significant feature from industry to medicine. Standard approaches are known to be very time-consuming and labor-intensive (e.g., culture media and biochemical tests). Conversely, screening techniques demand a quick and low-cost grouping of bacterial/fungal isolates and current analysis call for broad reports of microorganisms, involving the application of molecular techniques (e.g., 16S ribosomal RNA gene sequencing based on polymerase chain reaction). The goal of this review is to present the past and the present methods of detection and identification of microorganisms, and to discuss their advantages and their limitations.

Idioma original	Inglés
Número de artículo	130
Publicación	Microorganisms
Volumen	7
N.º	5
DOI	https://doi.org/10.3390/microorganisms7050130
Estado	Publicada - may. 2019
Publicado de forma externa	Sí

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Franco-Duarte, R., Černáková, L., Kadam, S., Kaushik, K. S., Salehi, B., Bevilacqua, A., Corbo, M. R., Antolak, H., Dybka-Stępień, K., Leszczewicz, M., Tintino, S. R., de Souza, V. C. A., Sharifi-Rad, J., Coutinho, H. D. M., Martins, N., & Rodrigues, C. F. (2019). Advances in chemical and biological methods to identify microorganisms—from past to present. Microorganisms, 7(5), Artículo 130. https://doi.org/10.3390/microorganisms7050130

@article{93776b7a89a04061bb1f71fe203a4908,

title = "Advances in chemical and biological methods to identify microorganisms—from past to present",

abstract = "Fast detection and identification of microorganisms is a challenging and significant feature from industry to medicine. Standard approaches are known to be very time-consuming and labor-intensive (e.g., culture media and biochemical tests). Conversely, screening techniques demand a quick and low-cost grouping of bacterial/fungal isolates and current analysis call for broad reports of microorganisms, involving the application of molecular techniques (e.g., 16S ribosomal RNA gene sequencing based on polymerase chain reaction). The goal of this review is to present the past and the present methods of detection and identification of microorganisms, and to discuss their advantages and their limitations.",

keywords = "Chromogenic media, DNA fingerprinting, Identification methods, MALDI-TOF, Microscopy techniques, PCR, RAPD PCR, Real-time PCR, WGS",

author = "Ricardo Franco-Duarte and Lucia {\v C}ern{\'a}kov{\'a} and Snehal Kadam and Kaushik, \{Karishma S.\} and Bahare Salehi and Antonio Bevilacqua and Corbo, \{Maria Rosaria\} and Hubert Antolak and Katarzyna Dybka-St{\c e}pie{\'n} and Martyna Leszczewicz and Tintino, \{Saulo Relison\} and \{de Souza\}, \{Veruska Cintia Alexandrino\} and Javad Sharifi-Rad and Coutinho, \{Henrique Douglas Melo\} and Nat{\'a}lia Martins and Rodrigues, \{C{\'e}lia F.\}",

note = "Publisher Copyright: {\textcopyright} 2019 by the authors. Licensee MDPI, Basel, Switzerland.",

year = "2019",

month = may,

doi = "10.3390/microorganisms7050130",

language = "Ingl{\'e}s",

volume = "7",

journal = "Microorganisms",

issn = "2076-2607",

publisher = "Multidisciplinary Digital Publishing Institute (MDPI)",

number = "5",

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Franco-Duarte, R, Černáková, L, Kadam, S, Kaushik, KS, Salehi, B, Bevilacqua, A, Corbo, MR, Antolak, H, Dybka-Stępień, K, Leszczewicz, M, Tintino, SR, de Souza, VCA, Sharifi-Rad, J, Coutinho, HDM, Martins, N & Rodrigues, CF 2019, 'Advances in chemical and biological methods to identify microorganisms—from past to present', Microorganisms, vol. 7, n.º 5, 130. https://doi.org/10.3390/microorganisms7050130

TY - JOUR

T1 - Advances in chemical and biological methods to identify microorganisms—from past to present

AU - Franco-Duarte, Ricardo

AU - Černáková, Lucia

AU - Kadam, Snehal

AU - Kaushik, Karishma S.

AU - Salehi, Bahare

AU - Bevilacqua, Antonio

AU - Corbo, Maria Rosaria

AU - Antolak, Hubert

AU - Dybka-Stępień, Katarzyna

AU - Leszczewicz, Martyna

AU - Tintino, Saulo Relison

AU - de Souza, Veruska Cintia Alexandrino

AU - Sharifi-Rad, Javad

AU - Coutinho, Henrique Douglas Melo

AU - Martins, Natália

AU - Rodrigues, Célia F.

PY - 2019/5

Y1 - 2019/5

N2 - Fast detection and identification of microorganisms is a challenging and significant feature from industry to medicine. Standard approaches are known to be very time-consuming and labor-intensive (e.g., culture media and biochemical tests). Conversely, screening techniques demand a quick and low-cost grouping of bacterial/fungal isolates and current analysis call for broad reports of microorganisms, involving the application of molecular techniques (e.g., 16S ribosomal RNA gene sequencing based on polymerase chain reaction). The goal of this review is to present the past and the present methods of detection and identification of microorganisms, and to discuss their advantages and their limitations.

AB - Fast detection and identification of microorganisms is a challenging and significant feature from industry to medicine. Standard approaches are known to be very time-consuming and labor-intensive (e.g., culture media and biochemical tests). Conversely, screening techniques demand a quick and low-cost grouping of bacterial/fungal isolates and current analysis call for broad reports of microorganisms, involving the application of molecular techniques (e.g., 16S ribosomal RNA gene sequencing based on polymerase chain reaction). The goal of this review is to present the past and the present methods of detection and identification of microorganisms, and to discuss their advantages and their limitations.

KW - Chromogenic media

KW - DNA fingerprinting

KW - Identification methods

KW - MALDI-TOF

KW - Microscopy techniques

KW - PCR

KW - RAPD PCR

KW - Real-time PCR

KW - WGS

UR - https://www.scopus.com/pages/publications/85074356466

U2 - 10.3390/microorganisms7050130

DO - 10.3390/microorganisms7050130

M3 - Artículo de revisión

AN - SCOPUS:85074356466

SN - 2076-2607

VL - 7

JO - Microorganisms

JF - Microorganisms

IS - 5

M1 - 130

ER -

Advances in chemical and biological methods to identify microorganisms—from past to present

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